Plot the z/p characteristics of a Hybrid-Pressure vertical coordinate

(cf. python package pyvgrid from PyPI and its command-line tool mkvgrid to build new vertical coordinates)

[1]:

# import & initialize epygram
import epygram
epygram.init_env()

import os
INPUTS_DIR = os.path.join('..', 'inputs')

# [2025/06/12-17:36:03][epygram.formats][<module>:0072][INFO]: Format: HDF5SAF is deactivated at runtime (Error: No module named 'h5py'). Please deactivate from config.implemented_formats or fix error.
# [2025/06/12-17:36:03][falfilfa4py][init_env:0089][WARNING]: ECCODES_DEFINITION_PATH env var is defined: may result in unexpected issues if not consistent with linked eccodes library

[2]:

# open resource in read mode
r = epygram.open(os.path.join(INPUTS_DIR, 'ICMSHAROM+0022'), 'r')
hybridP_geo = r.readfield('S058TEMPERATURE').geometry.vcoordinate


ecTrans at version: 1.6.0
commit: 2c4c818d79effe56d30bb2896866aba590a5fad8


[3]:

vmean = "LAPRXPK=False"  # or 'geometric' or 'arithmetic'

[4]:

vg = r.geometry.vcoordinate.to_vgrid(vertical_mean=vmean,
                                     vgrid_name=r.container.basename)

[5]:

# y and x may be among ('z', 'p', 'level', 'pthickness', 'zthickness')
fig = vg.bokeh_plot_y_vs_x('level', 'pthickness')

[6]:

# Save and open html output file:
# vg.bokeh_fig_to_html(fig)

# which will look like:
title 
[7]:

print(vg.write_AB_to_namelist())

--- Logging error ---
Traceback (most recent call last):
  File "/usr/lib/python3.12/logging/__init__.py", line 1160, in emit
    msg = self.format(record)
          ^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/logging/__init__.py", line 999, in format
    return fmt.format(record)
           ^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/logging/__init__.py", line 703, in format
    record.message = record.getMessage()
                     ^^^^^^^^^^^^^^^^^^^
  File "/usr/lib/python3.12/logging/__init__.py", line 392, in getMessage
    msg = msg % self.args
          ~~~~^~~~~~~~~~~
TypeError: not all arguments converted during string formatting
Call stack:

ICMSHAROM+0022.NAMVV1

  File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/ipykernel_launcher.py", line 18, in <module>
    app.launch_new_instance()
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/traitlets/config/application.py", line 1075, in launch_instance
    app.start()
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/ipykernel/kernelapp.py", line 739, in start
    self.io_loop.start()
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/tornado/platform/asyncio.py", line 211, in start
    self.asyncio_loop.run_forever()
  File "/usr/lib/python3.12/asyncio/base_events.py", line 641, in run_forever
    self._run_once()
  File "/usr/lib/python3.12/asyncio/base_events.py", line 1987, in _run_once
    handle._run()
  File "/usr/lib/python3.12/asyncio/events.py", line 88, in _run
    self._context.run(self._callback, *self._args)
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/ipykernel/kernelbase.py", line 545, in dispatch_queue
    await self.process_one()
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/ipykernel/kernelbase.py", line 534, in process_one
    await dispatch(*args)
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/ipykernel/kernelbase.py", line 437, in dispatch_shell
    await result
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/ipykernel/ipkernel.py", line 362, in execute_request
    await super().execute_request(stream, ident, parent)
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/ipykernel/kernelbase.py", line 778, in execute_request
    reply_content = await reply_content
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/ipykernel/ipkernel.py", line 449, in do_execute
    res = shell.run_cell(
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/ipykernel/zmqshell.py", line 549, in run_cell
    return super().run_cell(*args, **kwargs)
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/IPython/core/interactiveshell.py", line 3100, in run_cell
    result = self._run_cell(
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/IPython/core/interactiveshell.py", line 3155, in _run_cell
    result = runner(coro)
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/IPython/core/async_helpers.py", line 128, in _pseudo_sync_runner
    coro.send(None)
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/IPython/core/interactiveshell.py", line 3367, in run_cell_async
    has_raised = await self.run_ast_nodes(code_ast.body, cell_name,
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/IPython/core/interactiveshell.py", line 3612, in run_ast_nodes
    if await self.run_code(code, result, async_=asy):
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/IPython/core/interactiveshell.py", line 3672, in run_code
    exec(code_obj, self.user_global_ns, self.user_ns)
  File "/tmp/ipykernel_26915/3414190791.py", line 1, in <module>
    print(vg.write_AB_to_namelist())
  File "/home/mary/venvs/epygram-editable/lib/python3.12/site-packages/pyvgrid/hybridpressurevgrid.py", line 282, in write_AB_to_namelist
    logger.info("A/B coefficients written to namelist file:",fname)
Message: 'A/B coefficients written to namelist file:'
Arguments: ('ICMSHAROM+0022.NAMVV1',)

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